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Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST041396
species: Populus trichocarpa
miRNA family: MIR172
source: miRBase, original name: ptc-MIR172b (MI0002288)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGAATCTTGATGATGCTGCAT

miRNA*
GGAGCATCATCAAGATTCACA

mismatches: 2
bulges: 0

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pre-miRNA
TTGTTTGCGGGTGGAGCATCATCAAGATTCACATGCAAATGCACGGCCGGTGATGTTAAGAGTTAAATCTTTCTTTGTTTCTGTTCATCTGCCAAAGTTC
TTTGGAAGTGAGAATCTTGATGATGCTGCATCGGCAATAA


dot-bracket secondary structure
....((((.((((.((((((((((((((((.(((.((((.((..(((.(((((.....((((.((((......)))).))))..))))).)))...))..
))))...))).)))))))))))))))).)))).))))...



SIMILARITIES
miRBase ptc-MIR172f: 2e-31

PMRD ptc-miRf10081-akr: 1e-75

microPC miR172: 0.000002
UniProt no hits

RFAM mir-172: 2e-74

Identical with: ptc-miRf10081-akr from PMRD (MNEST051903)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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